This “suite” provides plugins to enhance 3D capabilities of ImageJ.
With many contributions from J. Ollion, MNHN USM0503, Paris, France.
This “suite” is composed of :
A 2D/3D spatial statistics plugin is also available.
Download and copy the following jars in your plugins folder or alternatively download the 3D suite bundle 3.83 and unzip it in your plugins folder. The various plugins will appear in the menu 3D of the plugins list.
You have also to manually download and copy into your plugins directory the imagescience.jar library from : http://www.imagescience.org/meijering/software/featurej/ . Note that this library is installed by default with Fiji.
Note than from version 2.7, 3D ImageJ Suite is also available in Fiji as an Fiji update site. The Java8 and ImageScience update sites must be activated in Fiji.
ImageJ 1.47 or later is required. Java3D is also required, check that 3D Viewer is working.
NEW From version 3.83 and later the new version 4.0.1 of 3D_Viewer is required (please remove the 3D_Viewer plugin provided by ImageJ and replace it by this version, just unzip the file in the plugins directory).
Bundle : mcib3d-suite3.83.zip
Core library : mcib3d-core3.83.jar
Plugins : mcib3d_plugins3.83.jar
If you use the 3D suite for your publication please cite :
J. Ollion, J. Cochennec, F. Loll, C. Escudé, T. Boudier. (2013) TANGO: A Generic Tool for High-throughput 3D Image Analysis for Studying Nuclear Organization. Bioinformatics 2013 Jul 15;29(14):1840-1. doi
GPL distribution (see licence ). Sources available on Github (see Download)