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plugin:stacks:3d_ij_suite:start [2018/03/14 03:27]
tboudier [Download]
plugin:stacks:3d_ij_suite:start [2019/01/31 04:57] (current)
tboudier [Installation]
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 Download and copy the following jars in your plugins folder or alternatively **download** the {{:plugin:stacks:3d_ij_suite:mcib3d-suite3.92.zip|3D suite bundle}} and unzip it in your plugins folder. The various plugins will appear in the menu //3D// of the plugins list. Download and copy the following jars in your plugins folder or alternatively **download** the {{:plugin:stacks:3d_ij_suite:mcib3d-suite3.92.zip|3D suite bundle}} and unzip it in your plugins folder. The various plugins will appear in the menu //3D// of the plugins list.
  
-You have also to manually download and copy into your plugins directory the **imagescience.jar** library from http://www.imagescience.org/meijering/software/featurej/ . Note that this library is installed by default with [[http://fiji.sc/|Fiji]]. +You have also to manually download and copy into your plugins directory the **imagescience.jar** library from [[http://www.imagescience.org/meijering/software/featurej/|here]]. Note that this library is installed by default with [[http://fiji.sc/|Fiji]]. 
  
 To use the //convex Hull plugin// you need to use this version of **QuickHull** ({{:plugin:stacks:3d_ij_suite:quickhull3d-1.0.0.jar|download jar}}).  To use the //convex Hull plugin// you need to use this version of **QuickHull** ({{:plugin:stacks:3d_ij_suite:quickhull3d-1.0.0.jar|download jar}}). 
  
-Note than from version 2.7, 3D ImageJ Suite is also available in Fiji as an [[http://fiji.sc/List_of_update_sites|Fiji update site]]. The **Java8** and **ImageScience** update sites must be activated in Fiji. +Note that from version 2.7, 3D ImageJ Suite is also available in Fiji as an [[http://fiji.sc/List_of_update_sites|Fiji update site]]. The **Java8** and **ImageScience** update sites must be activated in Fiji. 
 ===== Download ===== ===== Download =====
 ImageJ 1.47 or later is required. Java3D is also required, check that [[http://rsbweb.nih.gov/ij/plugins/3d-viewer/|3D Viewer]] is working.  ImageJ 1.47 or later is required. Java3D is also required, check that [[http://rsbweb.nih.gov/ij/plugins/3d-viewer/|3D Viewer]] is working. 
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 **NEW** From version 3.83 and later the new version 4.0.1 of 3D_Viewer is required (please remove the 3D_Viewer plugin provided by ImageJ and replace it by {{:plugin:stacks:3d_ij_suite:3d_viewer-mcib.zip|this version}}, just unzip the file in the plugins directory).  **NEW** From version 3.83 and later the new version 4.0.1 of 3D_Viewer is required (please remove the 3D_Viewer plugin provided by ImageJ and replace it by {{:plugin:stacks:3d_ij_suite:3d_viewer-mcib.zip|this version}}, just unzip the file in the plugins directory). 
  
-Java 1.8 or later is required. **The [[http://www.imagescience.org/meijering/software/featurej/|imagescience]] library is required for all plugins** : [[http://www.imagescience.org/meijering/software/download/imagescience.jar|download]]. Note that this library is included in the [[http://fiji.sc/|Fiji]] distribution. +Java 1.8 or later is required. **The [[http://www.imagescience.org/meijering/software/featurej/|imagescience]] library is required ** : [[http://www.imagescience.org/meijering/software/download/imagescience.jar|download]]. Note that this library is included in the [[http://fiji.sc/|Fiji]] distribution. 
  
-**Bundle** : {{:plugin:stacks:3d_ij_suite:mcib3d-suite3.92.zip|}}+**Bundle** : {{:plugin:stacks:3d_ij_suite:mcib3d-suite3.94.zip|}}
  
-Core library : {{:plugin:stacks:3d_ij_suite:mcib3d-core3.92.jar|}}+Core library : {{:plugin:stacks:3d_ij_suite:mcib3d-core3.94.jar|}}
  
-Plugins : {{:plugin:stacks:3d_ij_suite:mcib3d_plugins3.92.jar|}}, {{:plugin:stacks:3d_ij_suite:mcib3d_plugins3.92-src.zip|sources for plugins}} +Plugins : {{:plugin:stacks:3d_ij_suite:mcib3d_plugins3.94.jar|}}
  
 The [[http://rsbweb.nih.gov/ij/plugins/3d-convex-hull/index.html| ConvexHull3D]] plugin is required only for mesh measurements : {{:plugin:stacks:3d_ij_suite:quickhull3d-1.0.0.jar|quickhull jar}} The [[http://rsbweb.nih.gov/ij/plugins/3d-convex-hull/index.html| ConvexHull3D]] plugin is required only for mesh measurements : {{:plugin:stacks:3d_ij_suite:quickhull3d-1.0.0.jar|quickhull jar}}
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 ===== License ===== ===== License =====
-GPL distribution (see [[http://www.cecill.info/index.en.html|licence]] ). Sources available on Github (see Download) +GPL distribution (see [[http://www.cecill.info/index.en.html|license]]). Sources available on Github (see Download) 
  
 ===== Acknowledgements ===== ===== Acknowledgements =====
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   * 21/03/2014 V2.71: bug fix in Segment3D   * 21/03/2014 V2.71: bug fix in Segment3D
   * 03/06/2014 V2.8 : new plugin shape analysis. Load/save objects with calibration.   * 03/06/2014 V2.8 : new plugin shape analysis. Load/save objects with calibration.
-  * 03/10/2014 V2.9 : new Results Tables for 3DManager. +  * 03/10/2014 V2.9 : new Results Tables for 3DManager 
-  * 21/11/2014 V3.0 : closest object in selection for 3D Manager. Macros functions to save results for 3D Manager.+  * 21/11/2014 V3.0 : closest object in selection for 3D Manager. Macros functions to save results for 3D Manager
   * 27/04/2015 V3.1 : bug in colocalisation (rare objects configuration) + improved split + poles in ellipsoid fitting   * 27/04/2015 V3.1 : bug in colocalisation (rare objects configuration) + improved split + poles in ellipsoid fitting
   * 25/05/2015 V3.2 : improved watershed (especially for flat regions)   * 25/05/2015 V3.2 : improved watershed (especially for flat regions)
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   * 10/04/2017 V3.9 : Display computing time and ETC for filters, new LooknFeel for Manager     * 10/04/2017 V3.9 : Display computing time and ETC for filters, new LooknFeel for Manager  
   * 05/01/2018 V3.91: Bug fixes and improvements   * 05/01/2018 V3.91: Bug fixes and improvements
-  * 14/03/2018 V3.92: Bug fixes and improvements. New Roi3D overlay in 3DManager.  +  * 14/03/2018 V3.92: Bug fixes and improvements. New Roi3D overlay in 3DManager 
- +  * 19/10/2018 V3.93: Bug fixes and improvements. New plugins MultiColoc, EVF radial analysis and density  
 +  * 15/01/2019 V3.94: Bug fixes and improvements. 3D Manager interface improved.
plugin/stacks/3d_ij_suite/start.1520994432.txt.gz · Last modified: 2018/03/14 03:27 by tboudier
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