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plugin:utilities:tapas_:list_of_available_modules:start [2018/12/13 05:07] (current)
tboudier created
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 +<html>
 +<h3>
 +LIST OF TAPAS
 +</h3>
 +<table border="2">
 + <tr><td>Name and description</td><td>Parameters</td><td>Comments/default</td><td>Online</td></tr>
 + <tr>
 +    <td colspan="4"><b>INPUT/OUTPUT</b></td>
 +  </tr>
 + <tr><td><b>input</b>:load from Omero</td>
 + <td><b>project</b>:name or unique part of project name<br>
 +<b>dataset</b>:name or unique part of dataset name<br>
 +<b>name</b>:name of the data (change to image?)<br>
 +<b>channel</b>:the channel number<br>
 +<b>frame</b>:the frame number</td>
 +<td>(should be first process)<br>
 +<b>project</b>:?project?<br>
 +<b>dataset</b>: ?dataset?<br>
 +<b>name</b>:?name?<br>
 +<b>channel</b>:?channel?<br>
 +<b>frame</b>:?frame?</td>
 +<td>No</td>
 +</tr>
  
 +<tr>
 +<td><b>link</b>:create a link to an image in Omero</td>
 +<td><b>project</b>:name of project<br> 
 +<b>dataset</b>:name of dataset <br>
 +<b>name</b>:name of the data<br>
 +<b>channel</b>:the channel number<br>
 +<b>frame</b>:the frame number<br>
 +<b>link</b>:the name of the link</td>
 +<td><b>project</b>:?project?<br>
 +<b>dataset</b>: ?dataset?<br>
 +<b>name</b>:?name?<br>
 +<b>channel</b>:?channel?<br>
 +<b>frame</b>:?frame?</td>
 +<td>No</td>
 +</tr>
 +
 +<tr>
 +<td><b>omero</b>:save the current image in Omero</td>
 +<td><b>project</b>:name of project<br> 
 +<b>dataset</b>:name of dataset <br>
 +<b>name</b>:name of the data<br></td>
 +<td><b>project</b>:?project?<br>
 +<b>dataset</b>: ?dataset?<br>
 +Will replace previous version if the image if present</td>
 +<td>No</td>
 +</tr>
 +
 +<tr><td><b>load</b>:load an image as a file</td>
 + <td><b>dir</b>:directory<br>
 +<b>file</b>:file name<br>
 +</td>
 +<td>(for file)<br>
 +(for dir)<br></td>
 +<td>No</td>
 +</tr>
 +
 +<tr>
 +<td><b>sequence</b>:load a sequence of 2D images from a directory</td>
 +<td><b>dir</b>:directory<br>
 +<b>name</b>:part of file names<br>
 +<b>dimension</b>:dimension of the sequence</td>
 +<td>(for file)<br>
 +(for dir)<br>
 +<b>name</b>:* for all files in directory<br>
 +<b>dimension</b>:Z for 3D sequence or T for temporal sequence<br>
 +Will automatically exclude system files and not image files
 +</td>
 +<td>No</td>
 +</tr>
 +
 +<tr>
 +<td><b>composite</b>:merge channels to create a composite or RGB image</td>
 +<td><b>dir</b>:directory<br>
 +<b>list</b>:list of files<br>
 +<b>rgb</b>:create rgb image (yes) or composite (no)</td>
 +<td>(for file)<br>
 +(for dir)<br>
 +<b>rgb</b>:no<br>
 +</td>
 +<td>No</td>
 +</tr>
 +
 +
 +<tr><td><b>save</b>:save an image as a file</td>
 +<td><b>dir</b>:directory<br>
 +<b>file</b>:name of the file</td>
 +<td>(for file)<br>
 +(for dir)<br></td>
 +<td>Yes</td>
 + </tr>
 +
 + <tr>
 +<td><b>attach</b>:attach a list of files to a data in Omero</td>
 +<td><b>project</b>:name of project<br> 
 +<b>dataset</b>:name of dataset <br>
 +<b>name</b>:name of the data<br>
 +<b>dir</b>:directory of the files to be attached<br>
 +<b>list</b>:list of files names separated by <b>,</b><br>
 +</td>
 +<td><b>project</b>:?project?<br>
 +<b>dataset</b>:?dataset?<br>
 +<b>name</b>:?name?<br></td>
 +<td>No</td>
 +</tr>
 +
 + <tr><td><b>delete</b>:delete a list of files</td>
 + <td><b>dir</b>:directory of the files to be deleted<br>
 +<b>list</b>:list of files names separated by <b>,</b><br>
 +<b>format</b>:file format to save</td>
 +<td>(for file)<br>
 +(for dir)<br>
 +<b>format</b>:tif by default, else can be zip</td>
 +<td>No</td>
 + </tr>
 + </html>
plugin/utilities/tapas_/list_of_available_modules/start.txt · Last modified: 2018/12/13 05:07 by tboudier
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