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plugin:utilities:tapas_tutorial_:measurement:start [2019/02/21 04:54]
tboudier [Advanced usage]
plugin:utilities:tapas_tutorial_:measurement:start [2019/02/21 04:56] (current)
tboudier [Advanced usage]
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 So we could increase the parameter //minVolume// in the module **label**. We can also use another module simply called **biggest**. The final processing pipeline will then look like this : So we could increase the parameter //minVolume// in the module **label**. We can also use another module simply called **biggest**. The final processing pipeline will then look like this :
 <code> <code>
-// load the data channel 1+// load the data 
 process:input process:input
  
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 radz:2 radz:2
  
-// automatic thresholding Otsu+// automatic thresholding
 process:autoThreshold process:autoThreshold
 method:Triangle method:Triangle
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 file:?name?-biggest.csv file:?name?-biggest.csv
 </code> </code>
 +
 +We then obtain an image with only the biggest object, the head, and only one object in measurements.
 +
 +{{:plugin:stacks:3d_ij_suite:head-biggest.png|}}
 +
 +{{:plugin:stacks:3d_ij_suite:measurement2.png|}}
  
plugin/utilities/tapas_tutorial_/measurement/start.txt · Last modified: 2019/02/21 04:56 by tboudier
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