http://imagejdocu.tudor.lu/ 2010-03-10T16:38:25+01:00 http://imagejdocu.tudor.lu/ http://imagejdocu.tudor.lu/lib/images/favicon.ico text/html 2010-03-08T04:24:25+01:00 Ben Tupper http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:minimum_separation_distance:start&rev=1268018665&do=diff Introduction This plugin computes the minimum distance between objects. The Results Table must be populated with XStart and YStart and the current image must be the mask used to create the Results Table. Author Ben Tupper Description The objects are defined using ImageJ's eight-connected boundaries computed by the Wand class. Specifying a Nearest Neighbor Distance will trigger the output of an additional table in the log window the identifies objects that are 'connected' by virtue of bein… text/html 2010-02-21T17:47:51+01:00 Gabriel Landini http://imagejdocu.tudor.lu/doku.php?id=plugin:3d:3d_mandelbrot_fractals:start&rev=1266770871&do=diff Introduction This plugin draws 3D Mandelbrot fractals stacks. Author Amaury CHABOD a_chabod@yahoo.fr Description 2D Mandelbrot sets are (x+iy) points of plane where the iteration Zp+1=Zp2+(x+iy) converges. In the case of 3D, Daniel White uses the idea to create a pseudo-product using spherical coordinates: text/html 2010-02-21T13:29:54+01:00 chabod http://imagejdocu.tudor.lu/doku.php?id=plugin:start&rev=1266755394&do=diff Descriptions and downloads for ImageJ plugins stored here. There are many more plugins in the ImageJ website. Aligning * Align_4 * Align_RGB_planes * Align_Slice * bUnwarpJ: consistent and elastic registration * Image Stabilizer Analysis * Fourier Shape Analysis * Analyze Skeleton (2D/3D) * JACoP (Just Another Co-localization Plugin) * 3D Object Counter * ShapeLogic categorizer: Machine learning or rule based * Frap_Norm (FRAP measurement and normalization) * ClonalTo… text/html 2010-02-21T11:22:39+01:00 chabod http://imagejdocu.tudor.lu/doku.php?id=users:chabod&rev=1266747759&do=diff chabod text/html 2010-02-17T10:32:00+01:00 Christian Moll http://imagejdocu.tudor.lu/doku.php?id=gui:start2&rev=1266399120&do=diff This section documents the entries in the Graphical User Interface of ImageJ. The contents of these pages has been imported from the ImageJ website -written by Wayne Rasband- and updated where necessary. Last updated according to version 1.40b. File Edit * Undo * Cut * Copy * Copy to System * Paste * Paste Control... * Clear * Clear Outside * Fill * Draw * Invert * Selection * Options text/html 2010-02-11T18:35:56+01:00 Dimiter Prodanov http://imagejdocu.tudor.lu/doku.php?id=plugin:filter:mri_processor:start&rev=1265909756&do=diff Introduction This pluign calculates parametric maps in MR images. One important use of MRI is the possibility to use different mechanisms to distinguish different tissues and disease processes. The primary contrast mechanisms exploit relaxation of the magnetization. The two types of relaxations are termed spin-lattice relaxation, characterized by the relaxation time T1, and spin-spin relaxation, characterized by the relaxation time T2. T1 relaxation refers to the return of excited protons to t… text/html 2010-02-08T22:22:40+01:00 Vital Gutierrez http://imagejdocu.tudor.lu/doku.php?id=tutorial:start&rev=1265664160&do=diff ImageJ Plugins Ward: (08/02/2010) Author: Vital (Vital.Gutierrez_Fernandez@onera.fr) This tutorial consists in a set of instructions to use Eclipse to write plugins for ImageJ. Furthermore, a set simple plugins is provided to familiarize the reader to plugins functions going from the from the open of images to modify the data in the results table. The author appreciates any email with requests of simple codes or suggestions. The readers are encouraged to become acquaintance with the book of …