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plugin:morphology:3d_mathematical_morphology:start [2019/01/23 04:54]
plugin:morphology:3d_mathematical_morphology:start [2019/04/19 06:36] (current)
admin created
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 +===== 3D Mathematical Morphology ​ =====
 +Various algorithms for 3D Mathematical Morphology.
 +
 +===== Author =====
 +Thomas Boudier
 +
 +===== Description =====
 +
 +3D mathematical **operations** (erosion, dilatation, ...) are available in [[plugin:​filter:​3d_filters:​start|3D filters]] using minimum and maximum filters. ​
 +
 +A 3D **Fill Holes** is available, works the same way as in 2D but will not fill holes if it is not closed in the Z dimension. ​
 +
 +A 3D **Euclidean Distance Map** is available that takes into account the calibration of the image stack. A 3D normalized dsitance map (called Eroded Volume Fraction, or **EVF**) is also available.
 +
 +In the case of labelled objects (as count masks) a **Binary Close Labels** is available, that permits to performs closing on individual objects, hence avoiding objects to touch during dilatation operation. ​
 +
 +
 +===== Download =====
 +For details go to the [[plugin:​stacks:​3d_ij_suite:​start|3D ImageJ Suite]].
 +
 +===== Citation =====
 +When using the //3D Mathematical Morphology//​ plugins for publication,​ please refer to :
 +
 +J. Ollion, J. Cochennec, F. Loll, C. Escudé, T. Boudier. (**2013**) TANGO: A Generic Tool for High-throughput 3D Image Analysis for Studying Nuclear Organization. //​Bioinformatics//​ 2013 Jul 15;​29(14):​1840-1. [[http://​dx.doi.org/​10.1093/​bioinformatics/​btt276|doi]]
 +
 +===== License =====
 +GPL distribution (see [[http://​www.cecill.info/​index.en.html|license]]). Sources for plugins are available freely. Sources for core are available on request. ​
 +
 +
 +===== Changelog =====
 +
 +* 30/03/2016 V3.74: bug fixed in EDT
 +
 +
 +
 +