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plugin:utilities:tapas:list_of_available_modules:start [2018/12/13 05:07]
plugin:utilities:tapas:list_of_available_modules:start [2019/04/19 06:45] (current)
admin created
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 +<​html>​
 +<h3>
 +LIST OF TAPAS
 +</h3>
 +<table border="​2">​
 + <​tr><​td>​Name and description</​td><​td>​Parameters</​td><​td>​Comments/​default</​td><​td>​Online</​td></​tr>​
 + <​tr>​
 +    <td colspan="​4"><​b>​INPUT/​OUTPUT</​b></​td>​
 +  </​tr>​
 + <​tr><​td><​b>​input</​b>:​load from Omero</​td>​
 + <​td><​b>​project</​b>:​name or unique part of project name<​br>​
 +<​b>​dataset</​b>:​name or unique part of dataset name<​br>​
 +<​b>​name</​b>:​name of the data (change to image?​)<​br>​
 +<​b>​channel</​b>:​the channel number<​br>​
 +<​b>​frame</​b>:​the frame number</​td>​
 +<​td>​(should be first process)<​br>​
 +<​b>​project</​b>:?​project?<​br>​
 +<​b>​dataset</​b>:​ ?​dataset?<​br>​
 +<​b>​name</​b>:?​name?<​br>​
 +<​b>​channel</​b>:?​channel?<​br>​
 +<​b>​frame</​b>:?​frame?</​td>​
 +<​td>​No</​td>​
 +</tr>
  
 +<tr>
 +<​td><​b>​link</​b>:​create a link to an image in Omero</​td>​
 +<​td><​b>​project</​b>:​name of project<​br> ​
 +<​b>​dataset</​b>:​name of dataset <br>
 +<​b>​name</​b>:​name of the data<​br>​
 +<​b>​channel</​b>:​the channel number<​br>​
 +<​b>​frame</​b>:​the frame number<​br>​
 +<​b>​link</​b>:​the name of the link</​td>​
 +<​td><​b>​project</​b>:?​project?<​br>​
 +<​b>​dataset</​b>:​ ?​dataset?<​br>​
 +<​b>​name</​b>:?​name?<​br>​
 +<​b>​channel</​b>:?​channel?<​br>​
 +<​b>​frame</​b>:?​frame?</​td>​
 +<​td>​No</​td>​
 +</tr>
 +
 +<tr>
 +<​td><​b>​omero</​b>:​save the current image in Omero</​td>​
 +<​td><​b>​project</​b>:​name of project<​br> ​
 +<​b>​dataset</​b>:​name of dataset <br>
 +<​b>​name</​b>:​name of the data<​br></​td>​
 +<​td><​b>​project</​b>:?​project?<​br>​
 +<​b>​dataset</​b>:​ ?​dataset?<​br>​
 +Will replace previous version if the image if present</​td>​
 +<​td>​No</​td>​
 +</tr>
 +
 +<​tr><​td><​b>​load</​b>:​load an image as a file</​td>​
 + <​td><​b>​dir</​b>:​directory<​br>​
 +<​b>​file</​b>:​file name<​br>​
 +</td>
 +<​td>​(for file)<​br>​
 +(for dir)<​br></​td>​
 +<​td>​No</​td>​
 +</tr>
 +
 +<tr>
 +<​td><​b>​sequence</​b>:​load a sequence of 2D images from a directory</​td>​
 +<​td><​b>​dir</​b>:​directory<​br>​
 +<​b>​name</​b>:​part of file names<​br>​
 +<​b>​dimension</​b>:​dimension of the sequence</​td>​
 +<​td>​(for file)<​br>​
 +(for dir)<​br>​
 +<​b>​name</​b>:​* for all files in directory<​br>​
 +<​b>​dimension</​b>:​Z for 3D sequence or T for temporal sequence<​br>​
 +Will automatically exclude system files and not image files
 +</td>
 +<​td>​No</​td>​
 +</tr>
 +
 +<tr>
 +<​td><​b>​composite</​b>:​merge channels to create a composite or RGB image</​td>​
 +<​td><​b>​dir</​b>:​directory<​br>​
 +<​b>​list</​b>:​list of files<​br>​
 +<​b>​rgb</​b>:​create rgb image (yes) or composite (no)</​td>​
 +<​td>​(for file)<​br>​
 +(for dir)<​br>​
 +<​b>​rgb</​b>:​no<​br>​
 +</td>
 +<​td>​No</​td>​
 +</tr>
 +
 +
 +<​tr><​td><​b>​save</​b>:​save an image as a file</​td>​
 +<​td><​b>​dir</​b>:​directory<​br>​
 +<​b>​file</​b>:​name of the file</​td>​
 +<​td>​(for file)<​br>​
 +(for dir)<​br></​td>​
 +<​td>​Yes</​td>​
 + </​tr>​
 +
 + <tr>
 +<​td><​b>​attach</​b>:​attach a list of files to a data in Omero</​td>​
 +<​td><​b>​project</​b>:​name of project<​br> ​
 +<​b>​dataset</​b>:​name of dataset <br>
 +<​b>​name</​b>:​name of the data<​br>​
 +<​b>​dir</​b>:​directory of the files to be attached<​br>​
 +<​b>​list</​b>:​list of files names separated by <​b>,</​b><​br>​
 +</td>
 +<​td><​b>​project</​b>:?​project?<​br>​
 +<​b>​dataset</​b>:?​dataset?<​br>​
 +<​b>​name</​b>:?​name?<​br></​td>​
 +<​td>​No</​td>​
 +</tr>
 +
 + <​tr><​td><​b>​delete</​b>:​delete a list of files</​td>​
 + <​td><​b>​dir</​b>:​directory of the files to be deleted<​br>​
 +<​b>​list</​b>:​list of files names separated by <​b>,</​b><​br>​
 +<​b>​format</​b>:​file format to save</​td>​
 +<​td>​(for file)<​br>​
 +(for dir)<​br>​
 +<​b>​format</​b>:​tif by default, else can be zip</​td>​
 +<​td>​No</​td>​
 + </​tr>​
 + </​html>​