Colorizes selections listed in the ROI Manager by matching measurements to a color of a lookup table (LUT), generating particle-size heat maps. It complements the
Analyze>Analyze Particles… command. ROI Color Coder is part of the BAR.
ImageJ 1.46h or later. Use
Help>Update ImageJ… to upgrade to a newer version.
Fiji.app/plugins/folder (or subfolder).
ROI Color Coderwill be listed in the
Plugins>menu after running
ImageJ/luts/directory with a numeric prefix (e.g. '00-Gold.lut') to have them listed first in the LUT dropdown menu
Flatten [F]command to obtain an RGB image with the overlay rendered as pixel data. The image overlay is also embedded when saving the image in PNG or JPEG format (
Pluginsmenu, ROI Color Coder can be called from other macros, e.g.:
run("ROI Color Coder", "measurement=Area lut=Ice width=10 opacity=80");
— Tiago Ferreira 2014/06/19 23:10