This plugin allows counting objects in 3D, and getting some measurements about each object found.
Fabrice P. Cordelières, Bordeaux Imaging Center (France). Fabrice.Cordelieres at gmail dot com
As ImageJ's “Analyze Particles” function, 3D-OC also has a “redirect to” option, allowing one image to be taken as a mask to quantify intensity related parameters on a second image. To find out more, download the plugin's manual from here.
This plugin is composed of two parts:
When using the “3D Object Counter” plugin for publication, please refer to S. Bolte & F. P. Cordelières, A guided tour into subcellular colocalization analysis in light microscopy, Journal of Microscopy, Volume 224, Issue 3: 213-232, to this webpage and of course to ImageJ, as explained in the FAQ section, on ImageJ’s website. A copy of your paper being sent to my e-mail address would also be greatly appreciated !
Simply download 3d-oc_.jar to the Plugins folder of ImageJ, use the “Help/Update Menus” function to refresh the plugins' menu and use the “3D Object Counter/Set Measurements” and ““3D Object Counter/3D object counter” commands in the Plugins menu.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
Copyright (C) 2005 Fabrice P. Cordelières