User Tools
plugin:analysis:sarconfocal:start
Differences
This shows you the differences between two versions of the page.
| — |
plugin:analysis:sarconfocal:start [2019/04/12 13:13] (current) |
||
|---|---|---|---|
| Line 1: | Line 1: | ||
| + | ====== SarConfoCal (Simultaneous Fluorescence and Sarcomere Length Measurements from LSCM Images) ====== | ||
| + | |||
| + | ===== Description ===== | ||
| + | SarConfoCal is used to analyse scanlines and multi-channel (fluorescence and transmission) from Laser Scanning Confocal Microscopy (LSCM) images of myocytes, then it plots the fluorescence signal and the sarcomere length of each line versus time. | ||
| + | |||
| + | {{http://pccv.univ-tours.fr/ImageJ/SarConfoCal/img/FFT_spectrum.PNG?800x400}} | ||
| + | |||
| + | ===== Author ===== | ||
| + | Francois Gannier (francois.gannier at univ-tours.fr)\\ Come Pasqualin (come.pasqualin at univ-tours.fr) | ||
| + | |||
| + | ===== Publication ===== | ||
| + | An article on this work is in press in Bioinformatics ([[http://dx.doi.org/10.1093/bioinformatics/btw754|doi: 10.1093/bioinformatics/btw754]]) | ||
| + | |||
| + | ===== Download ===== | ||
| + | The latest release of this plugin can be downloaded from here: [[http://pccv.univ-tours.fr/ImageJ/SarConfoCal/]] | ||
| + | \\ The source code can be found [[https://github.com/PCCV/SarConfoCal | on github]]. | ||
| + | |||
| + | ===== Installation ===== | ||
| + | Download SarConfoCal.ijm and copy it into the "ImageJ\macros\toolsets" folder. | ||
| + | \\Start ImageJ or restart it if already opened. | ||
| + | \\In the "More tools" menu (>>) of the toolbar, select "SarConfoCal". A new set of buttons should now be present on the right side of the toolbar, as shown in the top figure below. SarConfoCal is now ready to use. | ||
| + | |||
| + | ===== Licence ===== | ||
| + | This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation ([[http://www.gnu.org/licenses/gpl.txt]])\\ | ||
| + | This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. | ||
plugin/analysis/sarconfocal/start.txt ยท Last modified: 2019/04/12 13:13 (external edit)
Page Tools
