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plugin:utilities:tapas:integrated_framework_for_automated_processing_and_analysis:start [2019/09/19 05:44]
tboudier [Installation]
plugin:utilities:tapas:integrated_framework_for_automated_processing_and_analysis:start [2019/09/19 05:55] (current)
tboudier [Features]
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 Basically we will propose modules from the [[plugin:​stacks:​3d_ij_suite:​start|3D ImageJ Suite]], ImageJ/​Fiji,​ along with other modules. Basically we will propose modules from the [[plugin:​stacks:​3d_ij_suite:​start|3D ImageJ Suite]], ImageJ/​Fiji,​ along with other modules.
  
-We will propose, as a beta versionthe following modules : +As for stable ​version ​0.5 the following modules ​are available ​
-  * Input/​Output files (using BioFormats)+  * Input/​Output ​to files (using BioFormats)
   * Input/​Output to OMERO   * Input/​Output to OMERO
   * 3D filtering   * 3D filtering
-  * Auto-threshold and Iterative thresholding+  * Auto-threshold, hysteresis ​and Iterative thresholding
   * 3D labeling   * 3D labeling
-  * Objects measurements +  * Objects measurements, signal quantification and numbering 
-  * ImageJ ​macro+  * Colocalisation and distances 
 +  * Calling ​ImageJ ​macros
  
  
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   * How to quantify **layers distribution** [[plugin:​utilities:​layers_analysis:​start|here]].   * How to quantify **layers distribution** [[plugin:​utilities:​layers_analysis:​start|here]].
  
-The list of available modules is described in {{:​plugin:​stacks:​3d_ij_suite:​tapasdescription0.5.pdf|TapasModules0.5.pdf}}. ​+The list of available modules is described in {{:​plugin:​stacks:​3d_ij_suite:​tapasdescription0.51.pdf|TapasModules0.51.pdf}}. ​
 ===== Citation ===== ===== Citation =====
 2018 Whitehead, L., Wimmer, V., Lafouresse, F., Ratnayake, D., Currie, P., Groom, J., Rogers, K. and 2018 Whitehead, L., Wimmer, V., Lafouresse, F., Ratnayake, D., Currie, P., Groom, J., Rogers, K. and
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 ===== Change log ===== ===== Change log =====
 +  * 19/09/2019 V0.51 : minor change, new module load attachment from Omero
   * 29/08/2019 V0.5 : stable version. New modules (see list)   * 29/08/2019 V0.5 : stable version. New modules (see list)
   * 06/05/2019 V0.41beta : fix bug in input/​output on Windows   * 06/05/2019 V0.41beta : fix bug in input/​output on Windows
plugin/utilities/tapas/integrated_framework_for_automated_processing_and_analysis/start.1568864661.txt.gz · Last modified: 2019/09/19 05:44 by tboudier