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plugin:utilities:tapas_tutorial:create_your_processing_pipeline:start

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plugin:utilities:tapas_tutorial:create_your_processing_pipeline:start [2019/09/11 07:30]
tboudier
plugin:utilities:tapas_tutorial:create_your_processing_pipeline:start [2019/09/19 05:49] (current)
tboudier [Your first module]
Line 11: Line 11:
 The first module should always be an input module, to load data from OMERO or a folder (please have a look to this [[plugin:​utilities:​tapas_tutorial_:​input_output_i:​start|tutorial on Input/​Output]]). ​ The first module should always be an input module, to load data from OMERO or a folder (please have a look to this [[plugin:​utilities:​tapas_tutorial_:​input_output_i:​start|tutorial on Input/​Output]]). ​
  
-In this tutorial we will start by **denoising** the image by using a 3D median filter. Select the module **filters**. This module has 3 parameters, the radius in XY, radius in Z and the name of the filter. A list of modules with description of parameters is available {{:​plugin:​stacks:​3d_ij_suite:​tapasdescription.pdf|here}}. You can change parameters if you want, the list of available parameters are : median, mean, tophat, open, close, min and max. Then just click on **create text** to create the corresponding text for this module, in our case it is simply :+In this tutorial we will start by **denoising** the image by using a 3D median filter. Select the module **filters**. This module has 3 parameters, the radius in XY, radius in Z and the name of the filter. A list of modules with description of parameters is available {{:​plugin:​stacks:​3d_ij_suite:​tapasdescription0.51.pdf|here}}. You can change parameters if you want, the list of available parameters are : median, mean, tophat, open, close, min and max. Then just click on **create text** to create the corresponding text for this module, in our case it is simply :
 <​code>​ <​code>​
 process:​filters process:​filters
plugin/utilities/tapas_tutorial/create_your_processing_pipeline/start.txt ยท Last modified: 2019/09/19 05:49 by tboudier